African forest elephants populations are declining rapidly due to local human pressures. But is it fair to expect other humans to live among potential threats to their livelihood? (Image Credit: Ray in Manila, CC BY 2.0, Image Cropped)
Tag Archives: genetic
Environmental DNA is a hot topic in biomonitoring. But what is it exactly, and how can it be used to monitor the dispersal of a reintroduced fish species? (Image credit: Gunnar Jacobs, CC BY-SA 2.0, Image Cropped).
Guest post by Christopher Hempel
Using environmental DNA to monitor the reintroduction success of the Rhine sculpin (Cottus rhenanus) in a restored stream (2019) Hempel et al., PeerJ, https://peerj.com/preprints/27574/
The term “environmental DNA (eDNA)” is currently booming in molecular ecology. But what exactly is this technological marvel? Essentially, eDNA comprises all DNA released by organisms into their environment, and originates from mucus, scales, faeces, epidermal cells, saliva, urine, hair, feathers – basically anything an organism might get rid of during its life. The eDNA can be collected from the environment, extracted, and analyzed to detect species using molecular approaches. As this is a very sensitive and non-invasive approach, it is a very hot topic for biomonitoring.
eDNA can be collected from any animal (in theory), but aquatic organisms in particular have been shown to be good target individuals (as eDNA is easiest to handle in water samples). Consequently, there are many studies using eDNA to monitor the activity of fish, reaching from the presence of invasive species to the effects of aquaculture. Here, we applied eDNA analysis to monitor a reintroduced fish species, the Rhine sculpin. The sculpin’s poor swimming ability make it useful as a bioindicator of the passability of streams and rivers. We wanted to investigate the potential of using eDNA to monitor the dispersal of the species in a remediated stream on a fine spatial and temporal scale.
Radiation can have extremely negative effects on an individual. But is it as easy to measure its effects on an entire population? (Image Credit: Hnapel, CC BY-SA 4.0, Image Cropped)
Variation in chronic radiation exposure does not drive life history divergence among Daphnia populations across the Chernobyl Exclusion Zone (2019) Goodman et al., Ecology and Evolution, DOI: 10.1002/ece3.4931
As anyone who has recently watched HBO’s Chernobyl can tell you, large doses of radiation are capable of doing some pretty serious damage to an organism. But whilst examining the effect of radiation on an individual might be simple, monitoring those effects on a population can be difficult. Whilst radiation negatively effects fitness, it can also help individuals with higher radiation tolerance to reproduce and dominate within the population of a single species, making it difficult to monitor the exact effects of radiation on that population. If a population is filled with only those who were strong enough to survive, you don’t get an idea of the variation in the radiation’s effects.
This week’s researchers tried to break through that problem by looking at different populations of a water flea in Chernobyl’s Exclusion Zone (CEZ) – the area still barred from entry in eastern Europe.
What They Did
The researchers sampled populations of the water flea Daphnia pulex (see below) from 8 lakes within the CEZ, all of which had experienced different doses of radiation since the Chernobyl disaster. Information on how much radiation those lakes were subject to was taken from Ukraine’s radiation databases and water samples collected at the site. The 38 types of Daphnia from the 8 lakes were then transported back to a laboratory and bred for three generations. The survival and reproductive success of this third generation was then modelled against radiation dose.
Did You Know: Daphnia as Study Organisms
Some species are frequently used across different ecological disciplines as model organisms. One example is the genus Daphnia, a genus of water fleas. They have a short life cycle, and can reproduce asexually. This means that scientists have the opportunity to disentangle environmental effects on populations of genetically similar individuals, as well as between populations of different genetic backgrounds.
What They Found
Whilst reproductive success and survival varied between the populations of Daphnia at different lakes, this did not seem to occur as a result of radiation dose. Radiation did not have a pronounced effect on any fitness variable.
Sample size is of course an issue here. Only having 8 lakes to compare the effects of radiation on populations was always going to make an effect of radiation dose hard to find. It was made more difficult by the fact that the effects of one lake were significantly different to the others, skewing results considerably. This is of course no fault of the authors, and hopefully technology in the future will allow us to expand the data used in these projects.
It’s important to note here that these results do not necessarily mean that radiation has no effect on Daphnia populations. Radiation is known to have negative effects on individual fitness, so what this study could tell us is that we need to view radiation as an environmental process which acts in concert with a variety of other biotic factors. Perhaps a study which takes into account further environmental variables and more lake populations would be able to further advance the work done in this paper.
We sometimes ignore the effects of climate change on plant life, but the potential severity of these effects isn’t something that should be ignored for long (Image Credit: Pisauakan, CC0)
From the California wildfires to the recent strikes across Australian primary schools, climate change is a topic that only seems to grow in its ubiquity. Yet whilst humans are increasingly focused on more obvious repercussions, such as extreme weather events, animal extinctions and shifting coastlines, we sometimes forget that climate change will have severe repercussions for plant life as well.
I spoke to Professor Johanna Schmitt of the University of California earlier this year to discuss some of those repercussions. Johanna’s team is working to determine how well certain plant species will be able to adapt in the face of rapid climate change.